Prediction Tools
- WoLF PSORT
(Horton et al., 2007)
: General Eukaryotic Localization Prediction (based on PSORTII, iPSORT)
- subnuclear
(Lei and Dai, 2005)
: Predict subnuclear localizations
- pTARGET
(Guda and Subramaniam, 2005)
: Based on the occurrence patterns of protein functional domains and the amino acid compositional differences.
- pSLIP
(Sarda et al., 2005)
: SVM based using multiple physicochemical properties
- P2SL
(Atalay and Cetin-Atalay, 2005)
: Implicit motif distribution based hybrid computational kernel
- PSLpred
(Bhasin et al., 2005)
: A svm based method for prokaryotic proteins
- PPROWLER
(Boden et al., 2005)
: Detecting residues in targeting peptides
- CoupleLoc
(Guo et al., 2005)
: Combining residue-couple model and SVM
- SVMtm Predictor
(Yuan et al., 2004)
: SVM for Transmembrane Segments Prediction
- PrediSi
(Hiller et al., 2004)
: Prediction of signal peptides and their cleavage positions
- ESLpred
(Bhasin and Raghava, 2004)
: SVM for Eukaryotics using Dipeptide composition & PSI-BLAST
- LOCtarget
(Nair and Rost, 2004)
: Database for structrual genomics targets
- PA-Sub
(Lu et al., 2004)
: Proteome Analyst Specialized Subcellular Localication Server
- PSORT-B
(Gardy et al., 2003)
: An updated version of PSORT for Gram-negative bacteria
- BPROMPT
(Taylor et al., 2003)
: A consensus server for membrane protein prediction
- SubLoc
(Hua et al., 2002)
: SVM prediction system based on amino acid composition alone
- TMHMM
(Krogh et al, 2001)
: Prediction of transmembrane helics in proteins
- TargetP
(Emanuelsson et al., 2000)
: Prediction for eukaryotics based on N-terminal signal sequences
- PredictNLS
(Cokol et al., 2000)
: Tool for Nuclear Localization Signals Analysis
- NNPSL
(Reinhardt et al., 1998)
: Prediction of Subcellular Localization by Neural Networks
- ChloroP
(Emanuelsson et al., 1999)
: Predict the presence of chloroplast transit peptides
- HMMTOP
(Tusnady et al., 1998)
: Prediction of transmembrane helics and topology of proteins
- SignalP
(Nielsen et al., 1997)
: Predict the presence and location of signal peptides
- PSORT
(Nakai et al., 1990s)
: First computer program for subcellular location prediction
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Protein Localization and Targeting Databases
Review Papers
Related Books
Bibliography
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