Descriptron namespace tags

(2005-09-16 DJM)

 

 

IDTYPE

Description

terminalp

affymetrix_netaffyx_affyprobe_uid

Affymetrix affyprobe

nil

affymetrix_netaffyx_chip_annot

Affymetrix Chip

t

biobase_transfac_domain_annot

BIOBASE transfac domain

t

biobase_transfac_domain_uid

BIOBASE transfac domain

t

chs-fitzimmons_vh-dissector_anatomy_uid

Center for Human Simulation Anatomy model

t

doe-mbi-ucla_dip_pxp_uid

DOE-MBI-UCLA DIP protein interaction

t

doe-mbi-ucla_dip_p_uid

DOE-MBI-UCLA DIP protein id

nil

ebi-sib_trembl-sp_p_acc

EBI-SIB trembl-sp protein

nil

ebi-sib_trembl-sp_p_uid

EBI-SIB trembl-sp protein

nil

ebi_interpro_domain_uid

EBI domain

t

ebi_interpro_pfam_uid

EBI interpro protein family

t

ebi_interpro_p_uid

EBI interpro protein

nil

ebi_trembl_p_acc

EBI trembl protein

nil

ebi_trembl_p_uid

EBI trembl protein

nil

embl_hssp_structure_uid

EMBL homology-structure id

nil

embl_smart_pfam_uid

EBI smart protein family

t

flybase_flybase_gene_uid

Flybase gene

nil

germonline_germonline_pathway_uid

UofBasel-ch germonline pathway

t

goc_go-bp_concept_uid

GO consortium biological process uid

t

goc_go-bp_term_annot

GO consortium go biological process term

t

goc_go-cc_concept_uid

GO consortium cellular component uid

t

goc_go-cc_term_annot

GO consortium go cellular component term

t

goc_go-mf_concept_uid

GO consortium molecular function uid

t

goc_go-mf_term_annot

GO consortium go molecular function term

t

gu_pirsf_pfam_uid

UofGeorgetown protein super-family

t

gu_pir_p_uid

UofGeorgetown protein

nil

hugo_hgnc_aliassymbol_annot

HUGO HGNC alias symbol

nil

hugo_hgnc_genbank_acc

HUGO HGNC genbank accession -mixed

nil

hugo_hgnc_officialname_annot

HUGO HGNC official gene name

nil

hugo_hgnc_officialsymbol_uid

HUGO HGNC official symbol

nil

incyte_ypd_p_uid

Incyte yeast protein database

nil

inra-fr_prodom_domain_uid

Prodom domain

t

iubmb_ec_p_acc

IUBMB EC protein

nil

jax_ensembl_chr_annot

jax-ensembl-chr-xref

t

jax_ensembl_gene_acc

jax-ensembl-gene-xref

nil

jax_ensembl_physical-end_annot

jax-ensembl-physical-end-Bp-xref

t

jax_ensembl_physical-start_annot

jax-ensembl-physical-start-Bp-xref

t

jax_ensembl_strand_annot

jax-ensembl-strand-xref

t

jax_mgd_aliassymbol_annot

jax-alias-annotation

nil

jax_mgd_build_annot

jax-build-annotation

t

jax_mgd_chr_annot

jax-chromosome

t

jax_mgd_cM_annot

jax-cM-annotation

t

jax_mgd_entrez-gene-chr_annot

jax-entrez-gene-chr-xref

t

jax_mgd_entrez-gene-physical-end-Bp_annot

jax-entrez-gene-bp-end-xref

t

jax_mgd_entrez-gene-physical-start-Bp_annot

jax-entrez-gene-bp-start-xref

t

jax_mgd_entrez-gene-strand_annot

jax-entrez-gene-strand-xref

t

jax_mgd_entrez-gene_uid

jax-entrez-gene-xref

nil

jax_mgd_gene_uid

jax-gene

nil

jax_mgd_marker-name_annot

jax-marker-name

nil

jax_mgd_marker-symbol_annot

jax-symbol

nil

jax_mgd_marker-type_annot

jax-marker-type

t

jax_mgd_marker_uid

jax-marker

nil

jax_mgd_phenotype_uid

jax-phenotype

t

jax_mgd_physical-end_annot

jax-physical-end-Bp

t

jax_mgd_physical-start_annot

jax-physical-start-Bp

t

jax_mgd_status_annot

jax-status

t

jax_mgd_strand_annot

jax-strand

t

jax_mgd_swissprot_acc

jax-swissprot-xref

nil

jhu_gdb_orf_uid

Johns Hopkins GDB orf

nil

ku_kegg_ligand_annot

UofKyoto ligand

nil

ku_kegg_ligand_uid

UofKyoto ligand

nil

ku_kegg_pathway_annot

UofKyoto KEGG pathway

t

ku_kegg_pathway_uid

UofKyoto KEGG pathway

t

mips_mips_pxp_uid

Munich MIPS protein interaction

t

mit_whitehead_AJ_annot

nil

t

mit_whitehead_Akr_annot

nil

t

mit_whitehead_assay_annot

nil

t

mit_whitehead_Balb_annot

nil

t

mit_whitehead_C3H_annot

nil

t

mit_whitehead_C57_annot

nil

t

mit_whitehead_Cast_annot

nil

t

mit_whitehead_chr_annot

nil

t

mit_whitehead_cM_annot

nil

t

mit_whitehead_Dba_annot

nil

t

mit_whitehead_genotype_annot

nil

t

mit_whitehead_Lp_annot

nil

t

mit_whitehead_marker_acc

nil

nil

mit_whitehead_Nod_annot

nil

t

mit_whitehead_Non_annot

nil

t

mit_whitehead_ob_annot

nil

t

mit_whitehead_Spr_annot

nil

t

mit_whithead_chr_annot

nil

t

ncbi_cdd_domain_acc

NCBI-conserved-domain

t

ncbi_cdd_domain_annot

NCBI-conserved-domain

t

ncbi_cog_pfam_acc

NCBI-COG protein family

t

ncbi_genbank_contig_acc

NCBI-genbank contig

t

ncbi_genbank_contig_uid

NCBI-genbank contig

t

ncbi_genbank_n_acc

NCBI-genbank nucleotide

nil

ncbi_genbank_n_uid

NCBI-genbank nucleotide

nil

ncbi_genbank_p_acc

NCBI-genbank protein

nil

ncbi_genbank_p_uid

NCBI-genbank protein

nil

ncbi_gene_gene_uid

NCBI Entrezgene gene uid

nil

ncbi_grif_function_annot

NCBI-LocusLink grif

t

ncbi_ll_aliasname_annot

NCBI-LocusLink name alias

nil

ncbi_ll_aliasprotien_annot

NCBI-LocusLink protein alias

nil

ncbi_ll_aliassymbol_annot

NCBI-LocusLink symbol alias

nil

ncbi_ll_go_annot

NCBI-LocusLink gene ontology definition

t

ncbi_ll_grif_annot

NCBI-LocusLink gene reference into function

t

ncbi_ll_loc-map_annot

NCBI-LocusLink map location

t

ncbi_ll_locus_uid

NCBI-LocusLink locus

nil

ncbi_ll_officialname_annot

NCBI-LocusLink official name

nil

ncbi_ll_officialsymbol_annot

NCBI-LocusLink official symbol

nil

ncbi_ll_organism_annot

NCBI-LocusLink organism

t

ncbi_ll_phenotype_annot

NCBI-LocusLink phenotype

t

ncbi_ll_phenotype_uid

NCBI-LocusLink phenotype

t

ncbi_ll_preferredname_annot

NCBI-LocusLink preferred name

nil

ncbi_ll_preferredsymbol_annot

NCBI-LocusLink preferred symbol

nil

ncbi_ll_summary_annot

NCBI-LocusLink summary

t

ncbi_mmdb_structure_annot

NCBI-MMDB structure

nil

ncbi_mmdb_structure_uid

NCBI-MMDB structure id

nil

ncbi_omim_gene_uid

NCBI-OMIM

nil

ncbi_pubmed_literature_uid

NCBI-pubmed literature

t

ncbi_refseq_nc_acc

NCBI-refseq complete genomic

t

ncbi_refseq_nc_uid

NCBI-refseq complete genomic

t

ncbi_refseq_ng_acc

NCBI-refseq genomic

t

ncbi_refseq_ng_uid

NCBI-refseq genomic

t

ncbi_refseq_nm_acc

NCBI-refseq mRNA

nil

ncbi_refseq_nm_uid

NCBI-refseq mRNA

nil

ncbi_refseq_np_acc

NCBI-refseq protein

nil

ncbi_refseq_np_uid

NCBI-refseq protein

nil

ncbi_refseq_xm_acc

NCBI-refseq model mRNA

nil

ncbi_refseq_xm_uid

NCBI-refseq model mRNA

nil

ncbi_refseq_xp_acc

NCBI-refseq model protein

nil

ncbi_refseq_xp_uid

NCBI-refseq model protein

nil

ncbi_refseq_xr_acc

NCBI-refseq non-coding RNA

nil

ncbi_refseq_xr_uid

NCBI-refseq non-coding RNA

nil

ncbi_taxonomy_taxon_uid

NCBI-taxonomy taxon

t

ncbi_ug_orf_uid

NCBI-unigene orf

nil

nlm_medline_literature_uid

NLM medline reference

t

null_null_null_null

null tag

t

pasteur-fr_candida_gene_uid

Pasteur-fr candida gene

nil

sanger_pfam_pfam_uid

Sanger pfam protein family

t

sanger_wormpep_p_uid

Sanger inst. protein id

nil

sib_prosite_domain_acc

SIB prosite domain acc

t

sib_prosite_domain_uid

SIB prosite domain id

t

sib_swissprot_p_acc

Swissprot protein acc

nil

sib_swissprot_p_uid

Swissprot protein id

nil

sri-carnegie_metacyc_pathway_acc

Stanford-Carnegie metacyc pathway

t

sri-carnegie_metacyc_pathway_annot

Stanford-Carnegie metacyc pathway description

t

stanford_sgd_genename_annot

Stanford SGD genename

nil

stanford_sgd_gene_uid

Stanford SPD id

nil

stanford_sgd_literature_uid

Stanford SGD literature

t

stanford_sgd_orf_uid

Stanford SGD orf

nil

stanford_sgd_phenotype_annot

Stanford SGD phenotype

t

stanford_sgd_summary_annot

Stanford SGD description

t

stanford_smd_expt_uid

Stanford microarray experiment

t

stanford_spd_aliassymbol_annot

Stanford SPD alias gene symbol

nil

stanford_spd_genesymbol_annot

Stanford SPD gene symbol

nil

stanford_spd_officialsymbol_annot

Stanford SPD official gene symbol

nil

tigr_cmr_microbial_uid

TIGR comprehensive microbial

t

tigr_egad_m_uid

TIGR EGAD rna

nil

tigr_tgi_orf_uid

TIGR orf

nil

tigr_tigrfams_pfam_uid

TIGR pfam

t

ucsd_tc-db_p_uid

UCSD tc-db protein

nil

uf-de_euroscarf_strain_uid

UofFrankfurt-de EUROSCARF strain

t

umber-uk_prints_domain_uid

UofManchester domain id

t

umn_cgc_nomenclature_genename_annot

University of Minnesota Caenorhabditus genetics center gene name

nil

umn_cgc_nomenclature_genesymbol_annot

University of Minnesota Caenorhabditus genetics center symbol

nil

um_bbd_enzyme_annot

UofMichigan biodegredation enzyme

nil

um_bbd_enzyme_uid

UofMichigan biodegredation enzyme

nil

um_bbd_pathway_annot

UofMichigan biodegredation pathway

t

uniprot_swissprot_genesymbol_annot

Uniprot_swissprot_genesymbol

nil

uniprot_swissprot_keyword_annot

Uniprot_swissprot keyword

t

uniprot_swissprot_litdates_annot

Uniprot citation dates

t

uniprot_swissprot_plength_annot

Uniprot protein length

t

uniprot_swissprot_pmw_annot

Uniprot molecular weight

t

uniprot_swissprot_proteinname_annot

Uniprot_swissprot protein name

nil

uniprot_swissprot_p_acc

Uniprot_swissprot protein

nil

uniprot_swissprot_p_seq

Uniprot_swissprot protein sequence

t

uniprot_swissprot_seqheader_annot

Uniprot_swissprot sequence header

t

uniprot_trembl_genesymbol_annot

Uniprot_trembl_genesymbol

nil

uniprot_trembl_go_uid

GO term id

t

uniprot_trembl_keyword_annot

Uniprot_trembl keyword

t

uniprot_trembl_litdates_annot

Uniprot citation dates

t

uniprot_trembl_plength_annot

Uniprot protein length

t

uniprot_trembl_pmw_annot

Uniprot molecular weight

t

uniprot_trembl_proteinname_annot

Uniprot_trembl protein name

nil

uniprot_trembl_p_acc

Uniprot_trembl protein

nil

uniprot_trembl_p_seq

Uniprot_trembl protein sequence

t

uniprot_trembl_seqheader_annot

Uniprot_trembl sequence header

t

UofW_foundation-anatomy_anatomy_uid

UofW Foundation model of Anatomy id

t

ut-ca_bind_officialsymbol_annot

University of Toronto BIND protein

nil

ut-ca_bind_pxp_uid

University of Toronto BIND protein interactioon

t

whitehead-mit_human-snp-db_marker_uid

Mit-whitehead Human SNPs

nil

whitehead-mit_mouse-snp-db_marker_uid

Mit-whitehead mouse SNPs

nil

wusm-sanger_wormbase_genename_annot

Sanger-WUSM C.elegans coding gene name

nil

wusm-sanger_wormbase_genesymbol_annot

Sanger-WUSM C.elegans gene symbol

nil

wusm-sanger_wormbase_orf_uid

Sanger-WUSM C.elegans coding sequence [CDS] id

nil

wusm-sanger_wormbase_p_acc

Sanger-WUSM C.elegans peptide accession

nil

wusm-sanger_wormbase_p_pid

Sanger-WUSM C.elegans peptide id

nil